If you change the Tomcat HTTP port from 4040 to another port number, such as 9090, you initially cannot synchronize the PocketPC client with the consolidated database (uaml) because the new server/port setting has not been populated in the database.
To fix this, click the MobiLink menu item after you log in into Mobile Web Studio. Doing so automatically updates all the appropriate database entries with the new server/port settings, and you need not deploy or delete any applications from MobiLink.
