[CR #339901] The autoindexer does not index the documents you have in your files directory.
Workaround:
In the PortalSearchautoindexer.cfg file, locate the line containing:
Database=database0
Change the line to:
Database=Sample
Clear out the runtime status files:
cd %SYBASE%\PortalSearch\autoindexer del *dirstat*
Stop and restart the autoindexer.